about me

portraitpic I am polymer scientist working as a postdoctoral fellow in the Medical Biochemistry and Biophysics Department at Karolinska Institutet, Sweden in the lab of Björn Högberg where I am designing probes and data processing algorithms for studying cell biology using self-assembled DNA nanostructures. The aim is to produce tools that can be used to gather ensemble statistics about surface protein spatial organization in cell populations while remaining cheap and simple to implement as a laboratory protocol or clinical diagnostic.

coarse-grained macromolecule simulation

This is a random-walk generating app for simulating the dynamics of a DNA chain in solution. Enter values for the Kuhn length and contour length to return estimates of the end-to-end distance and radius of gyration. (More features coming soon: excluded volume, temperature)